The trans-ancestral genomic architecture of glycemic traits

Publication type

Journal Article

Authors

  1. Ji Chen
  2. Cassandra N. Spracklen
  3. Gaëlle Marenne
  4. Arushi Varshney
  5. Laura J. Corbin
  6. Jian’an Luan
  7. Sara M. Willems
  8. Ying Wu
  9. Xiaoshuai Zhang
  10. Momoko Horikoshi
  11. Thibaud S. Boutin
  12. Reedik Mägi
  13. Johannes Waage
  14. Ruifang Li-Gao
  15. Kei Hang Katie Chan
  16. Jie Yao
  17. Mila D. Anasanti
  18. Audrey Y. Chu
  19. Annique Claringbould
  20. Jani Heikkinen
  21. Jaeyoung Hong
  22. Jouke-Jan Hottenga
  23. Shaofeng Huo
  24. Marika A. Kaakinen
  25. Tin Louie
  26. Winfried März
  27. Hortensia Moreno-Macías
  28. Anne Ndungu
  29. Sarah C. Nelson
  30. Ilja M. Nolte
  31. Kari E. North
  32. Chelsea K. Raulerson
  33. Debashree Ray
  34. Rebecca Rohde
  35. Denis Rybin
  36. Claudia Schurmann
  37. Xueling Sim
  38. Lorraine Southam
  39. Isobel D. Stewart
  40. Carol A. Wang
  41. Yujie Wang
  42. Peitao Wu
  43. Weihua Zhang
  44. Tarunveer S. Ahluwalia
  45. Emil V.R. Appel
  46. Lawrence F. Bielak
  47. Jennifer A. Brody
  48. Noël P. Burtt
  49. Claudia P. Cabrera
  50. Brian E. Cade
  51. Jin Fang Chai
  52. Xiaoran Chai
  53. Li-Ching Chang
  54. Chien-Hsiun Chen
  55. Brian H. Chen
  56. Kumaraswamy Naidu Chitrala
  57. Yen-Feng Chiu
  58. Hugoline G. de Haan
  59. Graciela E. Delgado
  60. Ayse Demirkan
  61. Qing Duan
  62. Jorgen Engmann
  63. Segun A. Fatumo
  64. Javier Gayán
  65. Franco Giulianini
  66. Jung Ho Gong
  67. Stefan Gustafsson
  68. Yang Hai
  69. Fernando P. Hartwig
  70. Jing He
  71. Yoriko Heianza
  72. Tao Huang
  73. Alicia Huerta-Chagoya
  74. Mi Yeong Hwang
  75. Richard A. Jensen
  76. Takahisa Kawaguchi
  77. Katherine A. Kentistou
  78. Young Jin Kim
  79. Marcus E. Kleber
  80. Ishminder K. Kooner
  81. Shuiqing Lai
  82. Leslie A. Lange
  83. Carl D. Langefeld
  84. Marie Lauzon
  85. Man Li
  86. Symen Ligthart
  87. Jun Liu
  88. Marie Loh
  89. Jirong Long
  90. Valeriya Lyssenko
  91. Massimo Mangino
  92. Carola Marzi
  93. May E. Montasser
  94. Abhishek Nag
  95. Masahiro Nakatochi
  96. Damia Noce
  97. Raymond Noordam
  98. Giorgio Pistis
  99. Michael Preuss
  100. Laura Raffield
  101. Laura J. Rasmussen-Torvik
  102. Stephen S. Rich
  103. Neil R. Robertson
  104. Rico Rueedi
  105. Kathleen Ryan
  106. Serena Sanna
  107. Richa Saxena
  108. Katharina E. Schraut
  109. Bengt Sennblad
  110. Kazuya Setoh
  111. Albert V. Smith
  112. Thomas Sparsø
  113. Rona J. Strawbridge
  114. Fumihiko Takeuchi
  115. Jingyi Tan
  116. Stella Trompet
  117. Erik van den Akker
  118. Peter J. van der Most
  119. Niek Verweij
  120. Mandy Vogel
  121. Heming Wang
  122. Chaolong Wang
  123. Nan Wang
  124. Helen R. Warren
  125. Wanqing Wen
  126. Tom Wilsgaard
  127. Andrew Wong
  128. Andrew R. Wood
  129. Tian Xie
  130. Mohammad Hadi Zafarmand
  131. Jing-Hua Zhao
  132. Wei Zhao
  133. Najaf Amin
  134. Zorayr Arzumanyan
  135. Arne Astrup
  136. Stephan J.L. Bakker
  137. Damiano Baldassarre
  138. Marian Beekman
  139. Richard N. Bergman
  140. Alain Bertoni
  141. Matthias Blüher
  142. Lori L. Bonnycastle
  143. Stefan R. Bornstein
  144. Donald W. Bowden
  145. Qiuyin Cai
  146. Archie Campbell
  147. Harry Campbell
  148. Yi Cheng Chang
  149. Eco J.C. de Geus
  150. Abbas Dehghan
  151. Shufa Du
  152. Gudny Eiriksdottir
  153. Aliki-Eleni Farmaki
  154. Mattias Frånberg
  155. Christian Fuchsberger
  156. Yutang Gao
  157. Anette P. Gjesing
  158. Anuj Goel
  159. Sohee Han
  160. Catharina A. Hartman
  161. Christian Herder
  162. Andrew A. Hicks
  163. Chang-Hsun Hsieh
  164. Willa A. Hsueh
  165. Sahoko Ichihara
  166. Michiya Igase
  167. M. Arfan Ikram
  168. W. Craig Johnson
  169. Marit E. Jørgensen
  170. Peter K. Joshi
  171. Rita R. Kalyani
  172. Fouad R. Kandeel
  173. Tomohiro Katsuya
  174. Chiea Chuen Khor
  175. Wieland Kiess
  176. Ivana Kolcic
  177. Teemu Kuulasmaa
  178. Johanna Kuusisto
  179. Kristi Läll
  180. Kelvin Lam
  181. Deborah A. Lawlor
  182. Nanette R. Lee
  183. Rozenn N. Lemaitre
  184. Honglan Li
  185. Shih-Yi Lin
  186. Jaana Lindström
  187. Allan Linneberg
  188. Jianjun Liu
  189. Carlos Lorenzo
  190. Tatsuaki Matsubara
  191. Fumihiko Matsuda
  192. Geltrude Mingrone
  193. Simon Mooijaart
  194. Sanghoon Moon
  195. Toru Nabika
  196. Girish N. Nadkarni
  197. Jerry L. Nadler
  198. Mari Nelis
  199. Matt J. Neville
  200. Jill M. Norris
  201. Yasumasa Ohyagi
  202. Annette Peters
  203. Patricia A. Peyser
  204. Ozren Polasek
  205. Qibin Qi
  206. Dennis Raven
  207. Dermot F. Reilly
  208. Alex Reiner
  209. Fernando Rivideneira
  210. Kathryn Roll
  211. Igor Rudan
  212. Sabanayagam Charumathi
  213. Kevin Sandow
  214. Naveed Sattar
  215. Annette Schürmann
  216. Jinxiu Shi
  217. Heather M. Stringham
  218. Kent D. Taylor
  219. Tanya M. Teslovich
  220. Betina Thuesen
  221. Paul R. H. J. Timmers
  222. Elena Tremoli
  223. Michael Y. Tsai
  224. Andre Uitterlinden
  225. Rob M. van Dam
  226. Diana van Heemst
  227. Astrid van Hylckama Vlieg
  228. Jana V. van Vliet-Ostaptchouk
  229. Jagadish Vangipurapu
  230. Henrik Vestergaard
  231. Tao Wang
  232. Ko Willems van Dijk
  233. Tatijana Zemunik
  234. Gonçalo R. Abecasis
  235. Linda S. Adair
  236. Carlos Alberto Aguilar-Salinas
  237. Marta E. Alarcón-Riquelme
  238. Ping An
  239. Larissa Aviles-Santa
  240. Diane M. Becker
  241. Lawrence J. Beilin
  242. Sven Bergmann
  243. Hans Bisgaard
  244. Corri Black
  245. Michael Boehnke
  246. Eric Boerwinkle
  247. Bernhard O. Böhm
  248. Klaus Bønnelykke
  249. D.I. Boomsma
  250. Erwin P. Bottinger
  251. Thomas A. Buchanan
  252. Mickaël Canouil
  253. Mark J. Caulfield
  254. John C. Chambers
  255. Daniel I. Chasman
  256. Yii-Der Ida Chen
  257. Ching-Yu Cheng
  258. Francis S. Collins
  259. Adolfo Correa
  260. Francesco Cucca
  261. H. Janaka de Silva
  262. George Dedoussis
  263. Sölve Elmståhl
  264. Michele K. Evans
  265. Ele Ferrannini
  266. Luigi Ferrucci
  267. Jose C. Florez
  268. Paul W. Franks
  269. Timothy M. Frayling
  270. Philippe Froguel
  271. Bruna Gigante
  272. Mark O. Goodarzi
  273. Penny Gordon-Larsen
  274. Harald Grallert
  275. Niels Grarup
  276. Sameline Grimsgaard
  277. Leif Groop
  278. Vilmundur Gudnason
  279. Xiuqing Guo
  280. Anders Hamsten
  281. Torben Hansen
  282. Caroline Hayward
  283. Susan R. Heckbert
  284. Bernardo L. Horta
  285. Wei Huang
  286. Erik Ingelsson
  287. James S. Pankow
  288. Marjo-Ritta Jarvelin
  289. Jost B. Jonas
  290. J. Wouter Jukema
  291. Pontiano Kaleebu
  292. Robert Kaplan
  293. Sharon L. R. Kardia
  294. Norihiro Kato
  295. Sirkka M. Keinanen-Kiukaanniemi
  296. Bong-Jo Kim
  297. Mika Kivimaki
  298. Heikki A. Koistinen
  299. Jaspal S. Kooner
  300. Antje Körner
  301. Peter Kovacs
  302. Diana Kuh
  303. Meena Kumari
  304. Zoltan Kutalik
  305. Markku Laakso
  306. Timo A. Lakka
  307. Lenore J. Launer
  308. Karin Leander
  309. Huaixing Li
  310. Xu Lin
  311. Lars Lind
  312. Cecilia Lindgren
  313. Simin Liu
  314. Ruth J.F. Loos
  315. Patrik K.E. Magnusson
  316. Anubha Mahajan
  317. Andres Metspalu
  318. Dennis O. Mook-Kanamori
  319. Trevor A. Mori
  320. Patricia B. Munroe
  321. Inger Njølstad
  322. Jeffrey R. O’Connell
  323. Albertine J. Oldehinkel
  324. Ken K. Ong
  325. Sandosh Padmanabhan
  326. Colin N.A. Palmer
  327. Nicholette D. Palmer
  328. Oluf Pedersen
  329. Craig E. Pennell
  330. David J. Porteous
  331. Peter P. Pramstaller
  332. Michael A. Province
  333. Bruce M. Psaty
  334. Lu Qi
  335. Leslie J. Raffel
  336. Rainer Rauramaa
  337. Susan Redline
  338. Paul M. Ridker
  339. Frits R. Rosendaal
  340. Timo E. Saaristo
  341. Manjinder Sandhu
  342. Jouko Saramies
  343. Neil Schneiderman
  344. Peter Schwarz
  345. Laura Scott.
  346. Elizabeth Selvin
  347. Peter Sever
  348. Xiao-Ou Shu
  349. P. Eline Slagboom
  350. Kerrin S. Small
  351. Blair H. Smith
  352. Harold Snieder
  353. Tamar Sofer
  354. Thorkild I. A. Sørensen
  355. Tim D. Spector
  356. Alice Stanton
  357. Claire J. Steves
  358. Michael Stumvoll
  359. Liang Sun
  360. Yasuharu Tabara
  361. E. Shyong Tai
  362. Nicholas J. Timpson
  363. Anke Tönjes
  364. Jaakko Tuomilehto
  365. Teresa Tusie
  366. Matti Uusitupa
  367. Pim van der Harst
  368. Cornelia van Duijn
  369. Veronique Vitart
  370. Peter Vollenweider
  371. Tanja G. M. Vrijkotte
  372. Lynne E. Wagenknecht
  373. Mark Walker
  374. Ya X. Wang
  375. Nick J. Wareham
  376. Richard M. Watanabe
  377. Hugh Watkins
  378. Wen B. Wei
  379. Ananda R. Wickremasinghe
  380. Gonneke Willemsen
  381. James F. Wilson
  382. Tien-Yin Wong
  383. Jer-Yuarn Wu
  384. Anny H. Xiang
  385. Lisa R. Yanek
  386. Loïc Yengo
  387. Mitsuhiro Yokota
  388. Eleftheria Zeggini
  389. Wei Zheng
  390. Alan B. Zonderman
  391. Jerome I. Rotter
  392. Anna L. Gloyn
  393. Mark I. McCarthy
  394. Josée Dupuis
  395. James B. Meigs
  396. Robert A. Scott
  397. Inga Prokopenko
  398. Aaron Leong
  399. Ching-Ti Liu
  400. Stephen C. J. Parker
  401. Karen L. Mohlke
  402. Claudia Langenberg
  403. Eleanor Wheeler
  404. Andrew P. Morris
  405. Inês Barroso

Publication date

June 15, 2021

Summary:

Glycemic traits are used to diagnose and monitor type 2 diabetes and cardiometabolic health. To date, most genetic studies of glycemic traits have focused on individuals of European ancestry. Here we aggregated genome-wide association studies comprising up to 281,416 individuals without diabetes (30% non-European ancestry) for whom fasting glucose, 2-h glucose after an oral glucose challenge, glycated hemoglobin and fasting insulin data were available. Trans-ancestry and single-ancestry meta-analyses identified 242 loci (99 novel; P < 5 × 10−8), 80% of which had no significant evidence of between-ancestry heterogeneity. Analyses restricted to individuals of European ancestry with equivalent sample size would have led to 24 fewer new loci. Compared with single-ancestry analyses, equivalent-sized trans-ancestry fine-mapping reduced the number of estimated variants in 99% credible sets by a median of 37.5%. Genomic-feature, gene-expression and gene-set analyses revealed distinct biological signatures for each trait, highlighting different underlying biological pathways. Our results increase our understanding of diabetes pathophysiology by using trans-ancestry studies for improved power and resolution.

Published in

Nature Genetics

Volume and page numbers

Volume: 53 , p.840 -860

DOI

https://doi.org/10.1038/s41588-021-00852-9

ISSN

10614036

Subjects

#547018

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